PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920088
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 348aa    MW: 39354.4 Da    PI: 11.2075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920088genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-2363157188
                EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grs 88 
                f k lt+sdv+k++rl +p++ ae++        gg+ ++   l++ed++g  W ++++++++s++yvltkGW +Fvk+++L +gD++ F+   g++
  462920088  63 FSKRLTKSDVGKLNRLLIPRQEAERFfpmalrsmGGDAAS--FLIFEDSTGVIWHFRYTFWQSSKTYVLTKGWIRFVKEKKLSDGDTIFFYQRaGED 157
                8899*****************************8777655..5999*********************************************431333 PP

2B373.62.4e-23186276187
                EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                f k lt+sdv+k++rl +p++ ae++        gg+ ++   l++ed++g  W ++++++++s++yvltkGW +Fvk+++L +gD++ F+  +r
  462920088 186 FSKRLTKSDVGKLNRLLIPRQEAERFfpmalrsmGGDAAS--FLIFEDSTGVIWHFRYTFWQSSKTYVLTKGWIRFVKEKKLSDGDTIFFY--QR 276
                8899*****************************8777655..5999********************************************9..33 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-3059157IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-2161151No hitNo description
SuperFamilySSF1019363.4E-2562158IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.64763169IPR003340B3 DNA binding domain
SMARTSM010198.3E-1363168IPR003340B3 DNA binding domain
PfamPF023627.0E-2063158IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-30182288IPR015300DNA-binding pseudobarrel domain
CDDcd100178.99E-22184281No hitNo description
SuperFamilySSF1019362.22E-25185282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.59186289IPR003340B3 DNA binding domain
SMARTSM010191.4E-13186289IPR003340B3 DNA binding domain
PfamPF023621.1E-19186276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQGEQTPMMH QSLLAMVNPV SSPIYGAPSA PMSAPVFPSS SRFGAGASAL LGGRQGVDMD  60
FMFSKRLTKS DVGKLNRLLI PRQEAERFFP MALRSMGGDA ASFLIFEDST GVIWHFRYTF  120
WQSSKTYVLT KGWIRFVKEK KLSDGDTIFF YQRAGEDSKT MHSSRFGAGA SALLGGRQGV  180
DMDFMFSKRL TKSDVGKLNR LLIPRQEAER FFPMALRSMG GDAASFLIFE DSTGVIWHFR  240
YTFWQSSKTY VLTKGWIRFV KEKKLSDGDT IFFYQRADGG CTGRIQGASR RRRRFNVLYC  300
RRKTCSSPVW WLTWRIQRPA GAAARVRRLG PLPTPTWSTS TPPLPMGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-276227913109DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445252.12e-33hypothetical protein SORBIDRAFT_07g006880
SwissprotQ8RZX95e-32Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
STRINGSi004979m1e-37(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-31B3 family protein